Package: CoalescentPhylo 0.1.0

CoalescentPhylo: Phylogenetics via Root Distances Method Under the Coalescent

Estimates phylogenetic trees from allele count data using the root distance method under the Coalescent Model. Given a matrix of allele counts across taxa and loci, the package estimates pairwise root distances under the Coalescent Model using maximum likelihood estimation. Then, it estimates a labeled phylogenetic tree from the estimated root distances. See Peng et al. (2021) <doi:10.1016/j.ympev.2021.107142>.

Authors:Arindam RoyChoudhury [aut, cre, cph], Ying Li [aut]