R-universe - arindamroychoudhury (Arindam RoyChoudhury)

CoalescentPhylo - Phylogenetics via Root Distances Method Under the Coalescent

Estimates phylogenetic trees from allele count data using the root distance method under the Coalescent Model. Given a matrix of allele counts across taxa and loci, the package estimates pairwise root distances under the Coalescent Model using maximum likelihood estimation. Then, it estimates a labeled phylogenetic tree from the estimated root distances. See Peng et al. (2021) <doi:10.1016/j.ympev.2021.107142>.

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3.00 score

rapidphylo - Rapidly Estimates Phylogeny from Large Allele Frequency Data Using Root Distances Method

Rapidly estimates tree-topology from large allele frequency data using Root Distances Method, under a Brownian Motion Model. See Peng et al. (2021) <doi:10.1016/j.ympev.2021.107142>.

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2.70 score 167 downloads